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The Ethereal
On the readability of overlap digraphs
April 17, 2015 ยท The Ethereal ยท ๐ Discrete Applied Mathematics
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Authors
Rayan Chikhi, Paul Medvedev, Martin Milanic, Sofya Raskhodnikova
arXiv ID
1504.04616
Category
cs.DM: Discrete Mathematics
Cross-listed
cs.DS,
math.CO,
q-bio.GN
Citations
6
Venue
Discrete Applied Mathematics
Last Checked
2 months ago
Abstract
We introduce the graph parameter readability and study it as a function of the number of vertices in a graph. Given a digraph D, an injective overlap labeling assigns a unique string to each vertex such that there is an arc from x to y if and only if x properly overlaps y. The readability of D is the minimum string length for which an injective overlap labeling exists. In applications that utilize overlap digraphs (e.g., in bioinformatics), readability reflects the length of the strings from which the overlap digraph is constructed. We study the asymptotic behaviour of readability by casting it in purely graph theoretic terms (without any reference to strings). We prove upper and lower bounds on readability for certain graph families and general graphs
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