On the readability of overlap digraphs

April 17, 2015 ยท The Ethereal ยท ๐Ÿ› Discrete Applied Mathematics

๐Ÿ”ฎ THE ETHEREAL: The Ethereal
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Authors Rayan Chikhi, Paul Medvedev, Martin Milanic, Sofya Raskhodnikova arXiv ID 1504.04616 Category cs.DM: Discrete Mathematics Cross-listed cs.DS, math.CO, q-bio.GN Citations 6 Venue Discrete Applied Mathematics Last Checked 2 months ago
Abstract
We introduce the graph parameter readability and study it as a function of the number of vertices in a graph. Given a digraph D, an injective overlap labeling assigns a unique string to each vertex such that there is an arc from x to y if and only if x properly overlaps y. The readability of D is the minimum string length for which an injective overlap labeling exists. In applications that utilize overlap digraphs (e.g., in bioinformatics), readability reflects the length of the strings from which the overlap digraph is constructed. We study the asymptotic behaviour of readability by casting it in purely graph theoretic terms (without any reference to strings). We prove upper and lower bounds on readability for certain graph families and general graphs
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