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The Cartographer
Chaining fragments in sequences: to sweep or not
June 24, 2015 Β· Declared Dead Β· π SPIRE
"No code URL or promise found in abstract"
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Authors
Julien Allali, Laetitia Bourgeade, Cedric Chauve
arXiv ID
1506.07458
Category
cs.DS: Data Structures & Algorithms
Citations
1
Venue
SPIRE
Last Checked
4 months ago
Abstract
Computing an optimal chain of fragments is a classical problem in string algorithms, with important applications in computational biology. There exist two efficient dynamic programming algorithms solving this problem, based on different principles. In the present note, we show how it is possible to combine the principles of two of these algorithms in order to design a hybrid dynamic programming algorithm that combines the advantages of both algorithms.
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