Fully-Online Suffix Tree and Directed Acyclic Word Graph Construction for Multiple Texts

July 28, 2015 Β· Declared Dead Β· πŸ› Algorithmica

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Authors Takuya Takagi, Shunsuke Inenaga, Hiroki Arimura, Dany Breslauer, Diptarama Hendrian arXiv ID 1507.07622 Category cs.DS: Data Structures & Algorithms Citations 7 Venue Algorithmica Last Checked 4 months ago
Abstract
We consider construction of the suffix tree and the directed acyclic word graph (DAWG) indexing data structures for a collection $\mathcal{T}$ of texts, where a new symbol may be appended to any text in $\mathcal{T} = \{T_1, \ldots, T_K\}$, at any time. This fully-online scenario, which arises in dynamically indexing multi-sensor data, is a natural generalization of the long solved semi-online text indexing problem, where texts $T_1, \ldots, T_{k}$ are permanently fixed before the next text $T_{k+1}$ is processed for each $1 \leq k < K$. We present fully-online algorithms that construct the suffix tree and the DAWG for $\mathcal{T}$ in $O(N \log Οƒ)$ time and $O(N)$ space, where $N$ is the total lengths of the strings in $\mathcal{T}$ and $Οƒ$ is their alphabet size. The standard explicit representation of the suffix tree leaf edges and some DAWG edges must be relaxed in our fully-online scenario, since too many updates on these edges are required in the worst case. Instead, we provide access to the updated suffix tree leaf edge labels and the DAWG edges to be redirected via auxiliary data structures, in $O(\log Οƒ)$ time per added character.
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