Parallel Query in the Suffix Tree

September 21, 2015 Β· Declared Dead Β· πŸ› arXiv.org

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Authors MatevΕΎ Jekovec, Andrej Brodnik arXiv ID 1509.06167 Category cs.DS: Data Structures & Algorithms Citations 4 Venue arXiv.org Last Checked 4 months ago
Abstract
Given the query string of length $m$, we explore a parallel query in a static suffix tree based data structure for $p \ll n$, where $p$ is the number of processors and $n$ is the length of the text. We present three results on CREW PRAM. The parallel query in the suffix trie requires $O(m + p)$ work, $O(m/p + \lg p)$ time and $O(n^2)$ space in the worst case. We extend the same technique to the suffix tree where we show it is, by design, inherently sequential in the worst case. Finally we perform the parallel query using an interleaved approach and achieve $O(m \lg p)$ work, $O(\frac{m}{p} \lg p)$ time and $O(n \lg p)$ space in the worst case.
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