Maximizing a Submodular Function with Viability Constraints

November 17, 2016 Β· Declared Dead Β· πŸ› Algorithmica

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Authors Wolfgang DvoΕ™Γ‘k, Monika Henzinger, David P. Williamson arXiv ID 1611.05753 Category cs.DS: Data Structures & Algorithms Citations 2 Venue Algorithmica Last Checked 4 months ago
Abstract
We study the problem of maximizing a monotone submodular function with viability constraints. This problem originates from computational biology, where we are given a phylogenetic tree over a set of species and a directed graph, the so-called food web, encoding viability constraints between these species. These food webs usually have constant {depth}. The goal is to select a subset of $k$ species that satisfies the viability constraints and has maximal phylogenetic diversity. As this problem is known to be NP-hard, we investigate approximation algorithms. We present the first constant factor approximation algorithm if the depth is constant. Its approximation ratio is $(1-\frac{1}{\sqrt{e}})$. This algorithm not only applies to phylogenetic trees with viability constraints but for arbitrary monotone submodular set functions with viability constraints. Second, we show that there is no $(1-1/e+Ξ΅)$-approximation algorithm for our problem setting (even for additive functions) and that there is no approximation algorithm for a slight extension of this setting.
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