ChemGAN challenge for drug discovery: can AI reproduce natural chemical diversity?

August 28, 2017 ยท Declared Dead ยท ๐Ÿ› arXiv.org

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Authors Mostapha Benhenda arXiv ID 1708.08227 Category stat.ML: Machine Learning (Stat) Cross-listed cs.AI, cs.LG Citations 106 Venue arXiv.org Last Checked 5 months ago
Abstract
Generating molecules with desired chemical properties is important for drug discovery. The use of generative neural networks is promising for this task. However, from visual inspection, it often appears that generated samples lack diversity. In this paper, we quantify this internal chemical diversity, and we raise the following challenge: can a nontrivial AI model reproduce natural chemical diversity for desired molecules? To illustrate this question, we consider two generative models: a Reinforcement Learning model and the recently introduced ORGAN. Both fail at this challenge. We hope this challenge will stimulate research in this direction.
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