Towards Automatic Generation of Shareable Synthetic Clinical Notes Using Neural Language Models
May 16, 2019 ยท Declared Dead ยท ๐ Proceedings of the 2nd Clinical Natural Language Processing Workshop
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Authors
Oren Melamud, Chaitanya Shivade
arXiv ID
1905.07002
Category
cs.CL: Computation & Language
Citations
41
Venue
Proceedings of the 2nd Clinical Natural Language Processing Workshop
Last Checked
4 months ago
Abstract
Large-scale clinical data is invaluable to driving many computational scientific advances today. However, understandable concerns regarding patient privacy hinder the open dissemination of such data and give rise to suboptimal siloed research. De-identification methods attempt to address these concerns but were shown to be susceptible to adversarial attacks. In this work, we focus on the vast amounts of unstructured natural language data stored in clinical notes and propose to automatically generate synthetic clinical notes that are more amenable to sharing using generative models trained on real de-identified records. To evaluate the merit of such notes, we measure both their privacy preservation properties as well as utility in training clinical NLP models. Experiments using neural language models yield notes whose utility is close to that of the real ones in some clinical NLP tasks, yet leave ample room for future improvements.
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