Reconstruction of time-consistent species trees

October 29, 2019 ยท The Ethereal ยท ๐Ÿ› Algorithms for Molecular Biology

๐Ÿ”ฎ THE ETHEREAL: The Ethereal
Pure theory โ€” exists on a plane beyond code

"No code URL or promise found in abstract"

Evidence collected by the PWNC Scanner

Authors Manuel Lafond, Marc Hellmuth arXiv ID 1910.13123 Category cs.DM: Discrete Mathematics Cross-listed cs.DS, math.CO Citations 10 Venue Algorithms for Molecular Biology Last Checked 2 months ago
Abstract
The history of gene families -- which are equivalent to event-labeled gene trees -- can to some extent be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes. The question then arises as whether inferred event-labeled gene trees are "biologically feasible" which is the case if one can find a species tree with which the gene tree can be reconciled in a time-consistent way. In this contribution, we consider event-labeled gene trees that contain speciation, duplication as well as horizontal gene transfer and we assume that the species tree is unknown. We provide a cubic-time algorithm to decide whether a "time-consistent" binary species for a given event-labeled gene tree exists and, in the affirmative case, to construct the species tree within the same time-complexity.
Community shame:
Not yet rated
Community Contributions

Found the code? Know the venue? Think something is wrong? Let us know!

๐Ÿ“œ Similar Papers

In the same crypt โ€” Discrete Mathematics