Constructing the Bijective and the Extended Burrows-Wheeler Transform in Linear Time
November 16, 2019 Β· Declared Dead Β· π arXiv.org
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Authors
Hideo Bannai, Juha KΓ€rkkΓ€inen, Dominik KΓΆppl, Marcin Picatkowski
arXiv ID
1911.06985
Category
cs.DS: Data Structures & Algorithms
Citations
2
Venue
arXiv.org
Last Checked
4 months ago
Abstract
The Burrows-Wheeler transform (BWT) is a permutation whose applications are prevalent in data compression and text indexing. The bijective BWT (BBWT) is a bijective variant of it. Although it is known that the BWT can be constructed in linear time for integer alphabets by using a linear time suffix array construction algorithm, it was up to now only conjectured that the BBWT can also be constructed in linear time. We confirm this conjecture by proposing a construction algorithm that is based on SAIS, improving the best known result of $O(n \lg n /\lg \lg n)$ time to linear.
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