Detecting $k$-(Sub-)Cadences and Equidistant Subsequence Occurrences
February 17, 2020 Β· Declared Dead Β· π Annual Symposium on Combinatorial Pattern Matching
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Authors
Mitsuru Funakoshi, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda, Ayumi Shinohara
arXiv ID
2002.06796
Category
cs.DS: Data Structures & Algorithms
Citations
1
Venue
Annual Symposium on Combinatorial Pattern Matching
Last Checked
4 months ago
Abstract
The equidistant subsequence pattern matching problem is considered. Given a pattern string $P$ and a text string $T$, we say that $P$ is an \emph{equidistant subsequence} of $T$ if $P$ is a subsequence of the text such that consecutive symbols of $P$ in the occurrence are equally spaced. We can consider the problem of equidistant subsequences as generalizations of (sub-)cadences. We give bit-parallel algorithms that yield $o(n^2)$ time algorithms for finding $k$-(sub-)cadences and equidistant subsequences. Furthermore, $O(n\log^2 n)$ and $O(n\log n)$ time algorithms, respectively for equidistant and Abelian equidistant matching for the case $|P| = 3$, are shown. The algorithms make use of a technique that was recently introduced which can efficiently compute convolutions with linear constraints.
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