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The Cartographer
Fast Circular Pattern Matching
April 20, 2022 Β· Declared Dead Β· π arXiv.org
"No code URL or promise found in abstract"
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Authors
Will Solow, Matthew Barich, Brendan Mumey
arXiv ID
2204.09562
Category
cs.DS: Data Structures & Algorithms
Citations
0
Venue
arXiv.org
Last Checked
5 months ago
Abstract
The Exact Circular Pattern Matching (ECPM) problem consists of reporting every occurrence of a rotation of a pattern $P$ in a text $T$. In many real-world applications, specifically in computational biology, circular rotations are of interest because of their prominence in virus DNA. Thus, given no restrictions on pre-processing time, how quickly all such circular rotation occurrences is of interest to many areas of study. We highlight, to the best of our knowledge, a novel approach to the ECPM problem and present four data structures that accompany this approach, each with their own time-space trade-offs, in addition to experimental results to determine the most computationally feasible data structure.
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