Space-time Trade-offs for the LCP Array of Wheeler DFAs
June 09, 2023 Β· Declared Dead Β· π SPIRE
"No code URL or promise found in abstract"
Evidence collected by the PWNC Scanner
Authors
Nicola Cotumaccio, Travis Gagie, Dominik KΓΆppl, Nicola Prezza
arXiv ID
2306.05684
Category
cs.DS: Data Structures & Algorithms
Citations
7
Venue
SPIRE
Last Checked
4 months ago
Abstract
Recently, Conte et al. generalized the longest-common prefix (LCP) array from strings to Wheeler DFAs, and they showed that it can be used to efficiently determine matching statistics on a Wheeler DFA [DCC 2023]. However, storing the LCP array requires $ O(n \log n) $ bits, $ n $ being the number of states, while the compact representation of Wheeler DFAs often requires much less space. In particular, the BOSS representation of a de Bruijn graph only requires a linear number of bits, if the size of alphabet is constant. In this paper, we propose a sampling technique that allows to access an entry of the LCP array in logarithmic time by only storing a linear number of bits. We use our technique to provide a space-time trade-off to compute matching statistics on a Wheeler DFA. In addition, we show that by augmenting the BOSS representation of a $ k $-th order de Bruijn graph with a linear number of bits we can navigate the underlying variable-order de Bruijn graph in time logarithmic in $ k $, thus improving a previous bound by Boucher et al. which was linear in $ k $ [DCC 2015].
Community Contributions
Found the code? Know the venue? Think something is wrong? Let us know!
π Similar Papers
In the same crypt β Data Structures & Algorithms
π
π
The Cartographer
R.I.P.
π»
Ghosted
Route Planning in Transportation Networks
R.I.P.
π»
Ghosted
Near-linear time approximation algorithms for optimal transport via Sinkhorn iteration
R.I.P.
π»
Ghosted
Hierarchical Clustering: Objective Functions and Algorithms
R.I.P.
π»
Ghosted
Graph Isomorphism in Quasipolynomial Time
π
π
The Cartographer
Simulation optimization: A review of algorithms and applications
Died the same way β π» Ghosted
R.I.P.
π»
Ghosted
Federated Learning: Strategies for Improving Communication Efficiency
R.I.P.
π»
Ghosted
In-Datacenter Performance Analysis of a Tensor Processing Unit
R.I.P.
π»
Ghosted
Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning
R.I.P.
π»
Ghosted