Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for 3D Molecule Generation

November 27, 2023 ยท Declared Dead ยท ๐Ÿ› International Conference on Learning Representations

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Authors Ameya Daigavane, Song Kim, Mario Geiger, Tess Smidt arXiv ID 2311.16199 Category cs.LG: Machine Learning Cross-listed q-bio.BM Citations 11 Venue International Conference on Learning Representations Last Checked 5 months ago
Abstract
We present Symphony, an $E(3)$-equivariant autoregressive generative model for 3D molecular geometries that iteratively builds a molecule from molecular fragments. Existing autoregressive models such as G-SchNet and G-SphereNet for molecules utilize rotationally invariant features to respect the 3D symmetries of molecules. In contrast, Symphony uses message-passing with higher-degree $E(3)$-equivariant features. This allows a novel representation of probability distributions via spherical harmonic signals to efficiently model the 3D geometry of molecules. We show that Symphony is able to accurately generate small molecules from the QM9 dataset, outperforming existing autoregressive models and approaching the performance of diffusion models.
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