Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for 3D Molecule Generation
November 27, 2023 ยท Declared Dead ยท ๐ International Conference on Learning Representations
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Authors
Ameya Daigavane, Song Kim, Mario Geiger, Tess Smidt
arXiv ID
2311.16199
Category
cs.LG: Machine Learning
Cross-listed
q-bio.BM
Citations
11
Venue
International Conference on Learning Representations
Last Checked
5 months ago
Abstract
We present Symphony, an $E(3)$-equivariant autoregressive generative model for 3D molecular geometries that iteratively builds a molecule from molecular fragments. Existing autoregressive models such as G-SchNet and G-SphereNet for molecules utilize rotationally invariant features to respect the 3D symmetries of molecules. In contrast, Symphony uses message-passing with higher-degree $E(3)$-equivariant features. This allows a novel representation of probability distributions via spherical harmonic signals to efficiently model the 3D geometry of molecules. We show that Symphony is able to accurately generate small molecules from the QM9 dataset, outperforming existing autoregressive models and approaching the performance of diffusion models.
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