On the existence of funneled orientations for classes of rooted phylogenetic networks
January 11, 2024 Β· Declared Dead Β· π Theoretical Computer Science
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Authors
Janosch DΓΆcker, Simone Linz
arXiv ID
2401.05611
Category
q-bio.PE
Cross-listed
cs.CC,
cs.DS
Citations
4
Venue
Theoretical Computer Science
Last Checked
3 months ago
Abstract
Recently, there has been a growing interest in the relationships between unrooted and rooted phylogenetic networks. In this context, a natural question to ask is if an unrooted phylogenetic network U can be oriented as a rooted phylogenetic network such that the latter satisfies certain structural properties. In a recent preprint, Bulteau et al. claim that it is computational hard to decide if U has a funneled (resp. funneled tree-child) orientation, for when the internal vertices of U have degree at most 5. Unfortunately, the proof of their funneled tree-child result appears to be incorrect. In this paper, we present a corrected proof and show that hardness remains for other popular classes of rooted phylogenetic networks such as funneled normal and funneled reticulation-visible. Additionally, our results hold regardless of whether U is rooted at an existing vertex or by subdividing an edge with the root.
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