Prompt-Efficient Fine-Tuning for GPT-like Deep Models to Reduce Hallucination and to Improve Reproducibility in Scientific Text Generation Using Stochastic Optimisation Techniques

Large Language Models (LLMs) are increasingly adopted for complex scientific text generation tasks, yet they often suffer from limitations in accuracy, consistency, and hallucination control. This thesis introduces a Parameter-Efficient Fine-Tuning (PEFT) approach tailored for GPT-like models, aiming to mitigate hallucinations and enhance reproducibility, particularly in the computational domain of mass spectrometry. We implemented Low-Rank Adaptation (LoRA) adapters to refine GPT-2, termed MS-GPT, using a specialized corpus of mass spectrometry literature. Through novel evaluation methods applied to LLMs, including BLEU, ROUGE, and Perplexity scores, the fine-tuned MS-GPT model demonstrated superior text coherence and reproducibility compared to the baseline GPT-2, confirmed through statistical analysis with the Wilcoxon rank-sum test. Further, we propose a reproducibility metric based on cosine similarity of model outputs under controlled prompts, showcasing MS-GPT's enhanced stability. This research highlights PEFT's potential to optimize LLMs for scientific contexts, reducing computational costs while improving model reliability.