Space-Efficient Online Computation of String Net Occurrences
November 19, 2024 Β· Declared Dead Β· π Annual Symposium on Combinatorial Pattern Matching
"No code URL or promise found in abstract"
Evidence collected by the PWNC Scanner
Authors
Takuya Mieno, Shunsuke Inenaga
arXiv ID
2411.12160
Category
cs.DS: Data Structures & Algorithms
Citations
4
Venue
Annual Symposium on Combinatorial Pattern Matching
Last Checked
4 months ago
Abstract
A substring $u$ of a string $T$ is said to be a repeat if $u$ occurs at least twice in $T$. An occurrence $[i..j]$ of a repeat $u$ in $T$ is said to be a net occurrence if each of the substrings $aub = T[i-1..j+1]$, $au = T[i-1..j+1]$, and $ub = T[i..j+1]$ occurs exactly once in $T$. The occurrence $[i-1..j+1]$ of $aub$ is said to be an extended net occurrence of $u$. Let $T$ be an input string of length $n$ over an alphabet of size $Ο$, and let $\mathsf{ENO}(T)$ denote the set of extended net occurrences of repeats in $T$. Guo et al. [SPIRE 2024] presented an online algorithm which can report $\mathsf{ENO}(T[1..i])$ in $T[1..i]$ in $O(nΟ^2)$ time, for each prefix $T[1..i]$ of $T$. Very recently, Inenaga [arXiv 2024] gave a faster online algorithm that can report $\mathsf{ENO}(T[1..i])$ in optimal $O(\#\mathsf{ENO}(T[1..i]))$ time for each prefix $T[1..i]$ of $T$, where $\#S$ denotes the cardinality of a set $S$. Both of the aforementioned data structures can be maintained in $O(n \log Ο)$ time and occupy $O(n)$ space, where the $O(n)$-space requirement comes from the suffix tree data structure. In this paper, we propose the two following space-efficient alternatives: (1) A sliding-window algorithm of $O(d)$ working space that can report $\mathsf{ENO}(T[i-d+1..i])$ in optimal $O(\#\mathsf{ENO}(T[i-d+1..i]))$ time for each sliding window $T[i-d+1..i]$ of size $d$ in $T$. (2) A CDAWG-based online algorithm of $O(e)$ working space that can report $\mathsf{ENO}(T[1..i])$ in optimal $O(\#\mathsf{ENO}(T[1..i]))$ time for each prefix $T[1..i]$ of $T$, where $e < 2n$ is the number of edges in the CDAWG for $T$. All of our proposed data structures can be maintained in $O(n \log Ο)$ time for the input online string $T$. We also discuss that the extended net occurrences of repeats in $T$ can be fully characterized in terms of the minimal unique substrings (MUSs) in $T$.
Community Contributions
Found the code? Know the venue? Think something is wrong? Let us know!
π Similar Papers
In the same crypt β Data Structures & Algorithms
π
π
The Cartographer
R.I.P.
π»
Ghosted
Route Planning in Transportation Networks
R.I.P.
π»
Ghosted
Near-linear time approximation algorithms for optimal transport via Sinkhorn iteration
R.I.P.
π»
Ghosted
Hierarchical Clustering: Objective Functions and Algorithms
R.I.P.
π»
Ghosted
Graph Isomorphism in Quasipolynomial Time
π
π
The Cartographer
Simulation optimization: A review of algorithms and applications
Died the same way β π» Ghosted
R.I.P.
π»
Ghosted
Federated Learning: Strategies for Improving Communication Efficiency
R.I.P.
π»
Ghosted
In-Datacenter Performance Analysis of a Tensor Processing Unit
R.I.P.
π»
Ghosted
Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning
R.I.P.
π»
Ghosted