OLS4: A new Ontology Lookup Service for a growing interdisciplinary knowledge ecosystem
January 22, 2025 Β· Declared Dead Β· π Bioinform.
"No code URL or promise found in abstract"
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Authors
James McLaughlin, Josh Lagrimas, Haider Iqbal, Helen Parkinson, Henriette Harmse
arXiv ID
2501.13034
Category
cs.IR: Information Retrieval
Citations
10
Venue
Bioinform.
Last Checked
4 months ago
Abstract
The Ontology Lookup Service (OLS) is an open source search engine for ontologies which is used extensively in the bioinformatics and chemistry communities to annotate biological and biomedical data with ontology terms. Recently there has been a significant increase in the size and complexity of ontologies due to new scales of biological knowledge, such as spatial transcriptomics, new ontology development methodologies, and curation on an increased scale. Existing Web-based tools for ontology browsing such as BioPortal and OntoBee do not support the full range of definitions used by today's ontologies. In order to support the community going forward, we have developed OLS4, implementing the complete OWL2 specification, internationalization support for multiple languages, and a new user interface with UX enhancements such as links out to external databases. OLS4 has replaced OLS3 in production at EMBL-EBI and has a backwards compatible API supporting users of OLS3 to transition.
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