A Completion-Aware Framework for Impactful Counterfactual Explainability in Graph Neural Networks

June 20, 2026 ยท Grace Period ยท ๐Ÿ› ECML PKDD 2026

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Authors Maria Myrto Villia, Filippos Gouidis, Theodore Patkos, Panos Trahanias arXiv ID 2606.22033 Category cs.LG: Machine Learning Cross-listed cs.AI Citations 0 Venue ECML PKDD 2026
Abstract
In this study, we propose a novel pipeline for generic, model-agnostic, local-level counterfactual explainability in graph neural networks (GNNs). Although counterfactual explainers capable of both adding and removing edges have emerged in recent years, the need for generic and efficient solutions remains unmet, particularly concerning qualitative explanation generation. Our approach couples progress in factual explainability with missing edge prediction models rooted in link prediction research, in order to enhance the quality, robustness and intuitiveness of explanations. A multi-faceted experimental analysis conducted on real-world and synthetic graph classification benchmarks, both binary and multi-label, demonstrates the advancements in comparison to state-of-the-art baselines across diverse metrics.
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